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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
2
DNase-seq
Assay category
39
DNA binding
2
DNA accessibility
Target of assay
37
histone
37
histone modification
22
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
57
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
March, 2019
1
November, 2020
Available data
271
fastq
266
bam
256
bigWig
126
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
26
tissue
14
primary cell
1
in vitro differentiated cells
Organ
13
musculature of body
12
pancreas
2
connective tissue
1
adipose tissue
Project
41
AMP
Genome assembly (visualization)
41
hg19
19
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
DNase-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
1
in vitro differentiated cells
adipocyte
1
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