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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
DNase-seq
87
ChIP-seq
2
ATAC-seq
Assay category
166
DNA accessibility
87
DNA binding
Target of assay
47
transcription factor
40
histone
40
histone modification
22
broad histone mark
18
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
148
June, 2019
57
November, 2017
26
August, 2017
9
October, 2019
8
November, 2018
4
October, 2017
1
March, 2019
Available data
2692
bam
2481
bigWig
1634
bed narrowPeak
1205
fastq
1113
tsv
936
bigBed narrowPeak
350
tagAlign
253
bed broadPeak
230
bigBed broadPeak
206
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
247
Homo sapiens
Biosample type
165
tissue
46
cell line
42
primary cell
Organ
78
kidney
50
liver
47
brain
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
253
AMP
Genome assembly (visualization)
230
hg19
229
GRCh38
Lab
251
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
connective tissue
musculature of body
BIOSAMPLE
ASSAY
253 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 38 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 13 more…
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