Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
89
ChIP-seq
2
ATAC-seq
Assay category
190
DNA accessibility
89
DNA binding
Target of assay
45
transcription factor
44
histone
44
histone modification
24
broad histone mark
20
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
53
November, 2017
35
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2975
bam
2780
bigWig
1584
bed narrowPeak
1439
tsv
1043
fastq
903
bigBed narrowPeak
373
tagAlign
279
bed broadPeak
248
bigBed broadPeak
240
bed bed3+
160
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
279
Homo sapiens
Biosample type
205
tissue
46
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
47
brain
46
musculature of body
36
limb
30
heart
epithelium
18
ureter
17
vasculature
15
pancreas
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
nerve
1
spleen
Project
279
AMP
Genome assembly (visualization)
261
hg19
243
GRCh38
Lab
277
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
epithelium
nerve
BIOSAMPLE
ASSAY
279 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 44 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download