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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
285
ChIP-seq
38
ATAC-seq
Assay category
285
DNA binding
38
DNA accessibility
Target of assay
226
transcription factor
65
histone
65
histone modification
65
recombinant protein
40
broad histone mark
30
RNA binding protein
25
narrow histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
285
November, 2017
210
June, 2019
189
October, 2019
133
May, 2021
125
August, 2017
106
August, 2021
97
May, 2019
66
November, 2018
65
April, 2019
65
February, 2023
58
December, 2017
46
September, 2018
44
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
28
December, 2018
27
May, 2020
23
February, 2021
15
January, 2019
14
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
386
bam
324
bigWig
323
bed narrowPeak
318
fastq
284
bigBed narrowPeak
134
zippedFastqFolder
67
tagAlign
54
bed broadPeak
48
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
323
Homo sapiens
Biosample type
221
cell line
96
tissue
6
primary cell
Organ
241
liver
64
brain
18
pancreas
4
epithelium
4
vasculature
2
blood vessel
Project
323
AMP
Genome assembly (visualization)
269
hg19
255
GRCh38
Lab
285
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
323 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
221
tissue
liver
20
islet of Langerhans
18
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
+ See 3 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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