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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
3
pCHi-C
Assay category
13
3D chromatin structure
Date released
10
March, 2020
3
October, 2019
2
November, 2019
1
August, 2018
Available data
2946
bam
2648
bigWig
1420
tsv
1356
bed narrowPeak
1101
fastq
928
bigBed narrowPeak
297
tagAlign
290
bed broadPeak
255
bigBed broadPeak
246
bed bed3+
95
txt
34
bed bedMethyl
34
bigBed bedMethyl
16
bedpe bed3+
13
hic
12
bed bed3
8
csv
4
bed bedgraph
3
hdf5
3
tar
2
ibed
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
8
tissue
7
in vitro differentiated cells
1
cell line
Organ
3
heart
3
pancreas
2
blood vessel
2
epithelium
2
musculature of body
vasculature
1
adipose tissue
1
connective tissue
1
liver
1
vein
Project
16
AMP
Genome assembly (visualization)
15
hg19
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
vasculature
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
islet of Langerhans
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
See all biosamples
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