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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
Assay category
7
3D chromatin structure
Date released
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2020
Available data
1037
bam
927
bigWig
500
bed narrowPeak
483
fastq
450
tsv
297
bigBed narrowPeak
137
tagAlign
104
bed broadPeak
100
bed bed3+
81
bigBed broadPeak
80
zippedFastqFolder
9
bed bedMethyl
9
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
txt
4
hdf5
3
cool
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
7
Homo sapiens
Biosample type
3
primary cell
3
tissue
1
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
0
brain
0
limb
Project
4
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
7 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
pancreas
1
cell line
EndoC_BH1
1
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