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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
RRBS
16
WGBS
5
Hi-C
Assay category
32
DNA methylation
5
3D chromatin structure
Date released
25
July, 2019
7
November, 2018
4
August, 2017
1
October, 2019
Available data
3237
bam
3014
bigWig
1676
bed narrowPeak
1586
tsv
1300
fastq
938
bigBed narrowPeak
372
tagAlign
261
bed broadPeak
237
bigBed broadPeak
227
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
37
Homo sapiens
Biosample type
22
tissue
13
primary cell
2
cell line
Organ
8
epithelium
8
heart
7
pancreas
5
brain
4
connective tissue
4
kidney
4
liver
musculature of body
4
vasculature
3
blood vessel
2
adipose tissue
2
spleen
1
eye
1
limb
1
pericardium
Project
37
AMP
Genome assembly (visualization)
21
hg19
17
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
musculature of body
nerve
BIOSAMPLE
ASSAY
37 results
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RRBS
WGBS
Hi-C
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 9 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 8 more…
cell line
HepG2
1
Panc1
1
See all biosamples
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