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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
18
RRBS
16
WGBS
Assay category
64
DNA accessibility
34
DNA methylation
Date released
64
August, 2021
21
July, 2019
7
November, 2018
6
August, 2017
Available data
3151
bam
2958
bigWig
1630
bed narrowPeak
1532
tsv
1296
fastq
928
bigBed narrowPeak
381
tagAlign
292
bed broadPeak
255
bigBed broadPeak
250
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
98
Homo sapiens
Biosample type
88
tissue
9
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
98
AMP
Genome assembly (visualization)
80
GRCh38
18
hg19
Lab
64
Katalin Susztak, Upenn
34
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
vasculature
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
98 results
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ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 10 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
See all biosamples
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