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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
20
ATAC-seq
7
WGBS
1
FAIRE-seq
Assay category
58
DNA binding
21
DNA accessibility
7
DNA methylation
Target of assay
58
transcription factor
20
RNA binding protein
15
recombinant protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
551
February, 2021
303
May, 2021
262
November, 2017
260
May, 2020
241
August, 2017
198
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
72
September, 2018
66
November, 2018
65
April, 2019
61
December, 2017
49
April, 2018
47
August, 2021
46
October, 2018
40
May, 2024
31
November, 2019
30
December, 2018
29
February, 2018
26
January, 2019
23
June, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
September, 2017
4
November, 2020
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
134
zippedFastqFolder
107
fastq
106
bam
106
bed narrowPeak
95
bigWig
68
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
86
Homo sapiens
Biosample type
52
cell line
34
tissue
Organ
64
liver
12
blood
12
bodily fluid
5
pancreas
5
spleen
Project
86
AMP
Genome assembly (visualization)
77
hg19
65
GRCh38
Lab
66
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
cell line
HepG2
39
1
GM12878
12
tissue
liver
4
20
spleen
3
2
pancreas
2
1
body of pancreas
2
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