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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
36
DNase-seq
4
total RNA-seq
2
ATAC-seq
1
WGBS
Assay category
48
DNA binding
38
DNA accessibility
4
Transcription
1
DNA methylation
Target of assay
48
histone
48
histone modification
34
broad histone mark
14
narrow histone mark
Date released
52
October, 2019
32
June, 2019
6
May, 2019
1
July, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
0
hic
Organism
91
Homo sapiens
Biosample type
91
tissue
Organ
614
pancreas
597
liver
564
connective tissue
425
adipose tissue
295
epithelium
227
heart
222
brain
158
vasculature
153
blood vessel
132
kidney
91
limb
85
artery
70
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
26
embryo
18
ureter
17
vein
16
spleen
6
eye
1
pericardium
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
August, 2020
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
6
13
1
muscle of arm
17
forelimb muscle
1
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