Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
3
single cell RNA-seq
Assay category
43
DNA binding
3
Transcription
Target of assay
824
histone modification
823
histone
471
transcription factor
417
narrow histone mark
405
broad histone mark
100
RNA binding protein
87
recombinant protein
23
chromatin remodeller
23
control
5
other context
5
other post-translational modification
Date released
25
November, 2017
6
January, 2019
3
December, 2017
3
July, 2019
3
May, 2021
2
August, 2017
2
December, 2018
2
November, 2018
Available data
321
bam
183
fastq
68
tagAlign
46
bigWig
23
bed narrowPeak
23
bigBed narrowPeak
9
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
tsv
Organism
46
Homo sapiens
Biosample type
32
cell line
11
primary cell
2
tissue
1
in vitro differentiated cells
Organ
25
liver
10
blood
10
bodily fluid
6
brain
3
epithelium
2
vasculature
1
blood vessel
Project
46
AMP
Genome assembly (visualization)
46
hg19
25
GRCh38
Lab
43
AMP-T2D consortium
3
Kyle Gaulton, UCSD
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
46 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG2
22
GM12878
10
primary cell
CD8-positive, alpha-beta T cell
3
cerebellar granule cell
2
skeletal muscle myoblast
2
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 2 more…
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
See all biosamples
Download