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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
3
single cell RNA-seq
Assay category
18
DNA binding
3
Transcription
Target of assay
753
histone modification
752
histone
462
transcription factor
381
narrow histone mark
370
broad histone mark
92
RNA binding protein
87
recombinant protein
22
chromatin remodeller
21
control
5
other context
5
other post-translational modification
Date released
14
November, 2017
3
July, 2019
3
May, 2021
1
August, 2017
Available data
279
bam
151
fastq
66
tagAlign
21
bigWig
9
bed bed3+
3
tsv
Organism
21
Homo sapiens
Biosample type
13
cell line
8
primary cell
Organ
13
liver
6
brain
epithelium
2
vasculature
1
blood vessel
Project
21
AMP
Genome assembly (visualization)
21
hg19
3
GRCh38
Lab
18
AMP-T2D consortium
3
Kyle Gaulton, UCSD
audit.WARNING.category!
inconsistent control read length
organ_slims!
epithelium
organ_slims!!
epithelium
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
single cell RNA-seq
cell line
HepG2
13
primary cell
CD8-positive, alpha-beta T cell
3
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
skeletal muscle myoblast
1
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