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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
single cell RNA-seq
2
pCHi-C
Assay category
3
Transcription
Date released
2
March, 2020
1
February, 2021
1
November, 2018
1
September, 2018
Available data
3192
bam
2982
bigWig
1580
bed narrowPeak
1576
tsv
1302
fastq
907
bigBed narrowPeak
387
tagAlign
231
bed broadPeak
194
bigBed broadPeak
185
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
tissue
Organ
kidney
1
liver
Project
5
AMP
Genome assembly (visualization)
2
hg19
Lab
5
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
kidney
BIOSAMPLE
ASSAY
5 results
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single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
pancreatic cell
2
tissue
liver
1
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