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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
303
ChIP-seq
51
single cell RNA-seq
2
total RNA-seq
1
pCHi-C
Assay category
303
DNA binding
53
Transcription
Target of assay
234
transcription factor
65
recombinant protein
59
control
32
RNA binding protein
9
chromatin remodeller
7
histone
7
histone modification
5
narrow histone mark
2
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
271
August, 2017
83
December, 2017
83
November, 2018
76
February, 2023
73
September, 2018
59
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
37
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
538
bam
480
bigWig
357
fastq
294
bed narrowPeak
293
bigBed narrowPeak
167
tsv
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
3
tar
1
bedpe bed3+
Organism
357
Homo sapiens
Biosample type
294
cell line
60
primary cell
2
tissue
1
in vitro differentiated cells
Organ
294
liver
42
epithelium
42
pancreas
9
brain
6
vasculature
3
blood vessel
3
connective tissue
1
adipose tissue
Project
357
AMP
Genome assembly (visualization)
307
hg19
259
GRCh38
Lab
357
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
357 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
pCHi-C
cell line
HepG2
294
primary cell
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic acinar cell
6
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
tissue
islet of Langerhans
2
in vitro differentiated cells
white fat cell
1
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