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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
333
total RNA-seq
80
single cell RNA-seq
6
WGBS
3
pCHi-C
2
ATAC-seq
2
small RNA-seq
Assay category
415
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
8
March, 2020
4
February, 2020
4
July, 2019
4
October, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
June, 2018
Available data
794
bam
705
bigWig
462
fastq
426
tsv
297
bed narrowPeak
170
bigBed narrowPeak
80
zippedFastqFolder
65
bed bed3+
57
bed broadPeak
43
bigBed broadPeak
19
tagAlign
7
bed bedMethyl
7
bedpe bed3+
7
bigBed bedMethyl
7
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
426
Homo sapiens
Biosample type
284
tissue
108
primary cell
34
cell line
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
418
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
412
hg19
410
GRCh38
Lab
419
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
ATAC-seq
small RNA-seq
tissue
islet of Langerhans
261
6
1
body of pancreas
3
2
tibial nerve
5
pancreas
1
1
gastrocnemius medialis
1
+ See 3 more…
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
1
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