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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
382
DNA binding
8
Transcription
Target of assay
233
transcription factor
76
histone
76
histone modification
70
control
65
recombinant protein
44
broad histone mark
32
narrow histone mark
31
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
604
February, 2021
399
May, 2021
395
August, 2017
382
November, 2017
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
168
July, 2018
97
July, 2019
94
February, 2023
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
70
May, 2019
66
May, 2022
61
November, 2019
60
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
373
bam
315
bigWig
300
fastq
292
bed narrowPeak
291
bigBed narrowPeak
67
tagAlign
55
bed broadPeak
49
bigBed broadPeak
9
tsv
3
tar
Organism
392
Homo sapiens
Biosample type
294
cell line
85
tissue
11
primary cell
2
in vitro differentiated cells
Organ
299
liver
91
brain
12
epithelium
6
vasculature
blood vessel
3
kidney
Project
392
AMP
Genome assembly (visualization)
266
GRCh38
262
hg19
Lab
392
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
392 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
cell line
HepG2
294
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 4 more…
primary cell
hepatocyte
5
astrocyte of the cerebellum
3
choroid plexus epithelial cell
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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