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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
65
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
707
February, 2021
395
August, 2017
385
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
176
May, 2022
174
February, 2023
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
83
fastq
82
bam
75
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
83
Homo sapiens
Biosample type
56
cell line
26
tissue
1
primary cell
Organ
48
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
83
AMP
Genome assembly (visualization)
74
GRCh38
66
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2019
organ_slims!
skeleton
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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