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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
306
ChIP-seq
Assay category
306
DNA binding
Target of assay
234
transcription factor
77
histone
histone modification
71
control
65
recombinant protein
44
broad histone mark
33
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
other post-translational modification
Date released
715
February, 2021
314
May, 2020
306
November, 2017
299
August, 2021
259
May, 2021
206
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
80
November, 2018
61
March, 2020
59
December, 2017
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
305
bam
294
fastq
247
bigWig
227
bed narrowPeak
227
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
11
tagAlign
3
tar
Organism
306
Homo sapiens
Biosample type
288
cell line
12
tissue
6
primary cell
Organ
288
liver
18
brain
4
epithelium
4
vasculature
2
blood vessel
Project
306
AMP
Genome assembly (visualization)
245
hg19
197
GRCh38
Lab
306
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
lab.title!
Xin Sun, UCSD
target.investigated_as!
histone modification
other post-translational modification
BIOSAMPLE
ASSAY
306 results
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Clear Filters
ChIP-seq
cell line
HepG2
288
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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