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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
Assay category
111
DNA binding
Target of assay
982
histone modification
981
histone
494
narrow histone mark
489
transcription factor
486
broad histone mark
343
control
108
RNA binding protein
88
recombinant protein
23
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
74
November, 2017
18
November, 2018
7
October, 2019
6
January, 2019
3
December, 2017
2
December, 2018
1
August, 2017
Available data
111
bam
110
bed narrowPeak
110
bigWig
104
fastq
103
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
107
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
93
liver
10
blood
10
bodily fluid
7
kidney
1
epithelium
Project
111
AMP
Genome assembly (visualization)
109
GRCh38
107
hg19
Lab
111
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
3
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
lab.title!
Xin Sun, UCSD
organ_slims!
ovary
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
cell line
HepG2
90
GM12878
10
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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