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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
39
DNA binding
14
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
16
histone
16
histone modification
15
control
9
narrow histone mark
8
transcription factor
7
broad histone mark
3
other context
3
other post-translational modification
Date released
13
February, 2018
10
December, 2017
9
November, 2018
8
August, 2021
7
December, 2018
7
January, 2019
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
57
bam
48
fastq
42
bigWig
25
bed narrowPeak
15
tsv
13
bigBed narrowPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
59
Homo sapiens
Biosample type
26
in vitro differentiated cells
25
tissue
8
cell line
Organ
937
pancreas
759
liver
678
connective tissue
513
epithelium
491
adipose tissue
393
heart
351
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
42
GRCh38
40
hg19
1
hg18
Lab
59
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
month_released!
December, 2019
organ_slims!
thymus
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
20
2
1
1
1
cell line
H1-hESC
8
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