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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
29
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
29
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
broad histone mark
16
control
13
narrow histone mark
Date released
39
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
3
February, 2020
May, 2019
Available data
77
bam
56
bed narrowPeak
55
bigWig
48
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
856
pancreas
728
liver
633
connective tissue
471
epithelium
470
adipose tissue
336
kidney
322
heart
203
brain
163
vasculature
159
bone element
157
blood vessel
122
artery
85
limb
73
musculature of body
69
blood
69
bodily fluid
61
eye
31
embryo
27
nerve
21
spleen
19
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
61
GRCh38
60
hg19
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
85 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
19
1
5
muscle of arm
17
muscle of leg
13
1
tibial artery
2
9
1
1
gastrocnemius medialis
1
4
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