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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
3
MeRIP-seq
Assay category
24
DNA binding
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
1
chromatin remodeller
Date released
12
August, 2017
3
December, 2017
3
November, 2020
3
October, 2019
2
June, 2019
2
November, 2019
1
August, 2021
1
May, 2019
May, 2021
Available data
24
bam
15
fastq
1
tagAlign
Organism
27
Homo sapiens
Biosample type
19
primary cell
5
cell line
3
in vitro differentiated cells
Organ
108
liver
52
pancreas
35
connective tissue
brain
29
epithelium
24
adipose tissue
22
vasculature
21
blood vessel
20
heart
17
limb
12
kidney
11
nerve
9
artery
8
spleen
7
embryo
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
Project
27
AMP
Lab
24
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
May, 2021
organ_slims!
brain
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
MeRIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
hepatocyte
1
+ See 2 more…
cell line
EndoC_BH1
2
3
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
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