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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
480
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
8
ATAC-seq
Assay category
480
DNA binding
168
Transcription
8
DNA accessibility
Target of assay
240
transcription factor
149
histone
149
histone modification
91
broad histone mark
88
control
65
recombinant protein
58
narrow histone mark
36
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
629
bam
556
bigWig
371
bed narrowPeak
370
fastq
363
bigBed narrowPeak
164
tsv
81
tagAlign
61
bed broadPeak
51
bigBed broadPeak
3
tar
Organism
656
Homo sapiens
Biosample type
305
tissue
294
cell line
57
primary cell
Organ
294
liver
162
pancreas
107
brain
57
heart
39
epithelium
23
kidney
6
vasculature
3
blood vessel
3
connective tissue
1
adipose tissue
1
spleen
Project
656
AMP
Genome assembly (visualization)
505
GRCh38
502
hg19
Lab
655
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
656 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
islet of Langerhans
120
1
heart left ventricle
35
kidney
23
layer of hippocampus
22
brain
15
+ See 10 more…
cell line
HepG2
294
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
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