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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
547
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
547
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
247
transcription factor
191
histone modification
190
histone
106
broad histone mark
106
control
84
narrow histone mark
65
recombinant protein
36
RNA binding protein
10
chromatin remodeller
2
other context
2
other post-translational modification
Date released
397
May, 2021
385
November, 2017
341
May, 2020
314
August, 2021
310
October, 2019
269
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
190
February, 2023
166
July, 2018
120
May, 2019
90
July, 2019
83
December, 2017
82
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
52
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
18
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
565
bam
504
bigWig
501
fastq
374
bed narrowPeak
320
bigBed narrowPeak
123
tagAlign
90
bed broadPeak
89
tsv
65
bigBed broadPeak
22
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
Organism
654
Homo sapiens
Biosample type
297
tissue
294
cell line
63
primary cell
Organ
347
liver
173
pancreas
connective tissue
91
brain
57
adipose tissue
31
epithelium
26
musculature of body
6
vasculature
3
blood vessel
Project
654
AMP
Genome assembly (visualization)
456
hg19
431
GRCh38
Lab
654
AMP-T2D consortium
Audit category:
29
missing controlled_by
Audit category:
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
654 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
1
3
skeletal muscle tissue
22
4
layer of hippocampus
22
caudate nucleus
15
+ See 6 more…
cell line
HepG2
294
primary cell
skeletal muscle myoblast
14
1
2
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
astrocyte of the cerebellum
3
+ See 3 more…
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