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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
42
ChIP-seq
17
total RNA-seq
12
ATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
115
Transcription
42
DNA binding
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
RNA binding protein
Date released
707
February, 2021
392
May, 2021
387
August, 2017
353
November, 2017
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
180
August, 2021
168
July, 2018
134
June, 2019
111
May, 2019
97
July, 2019
73
September, 2018
69
December, 2017
64
October, 2018
63
November, 2018
62
March, 2020
60
November, 2019
59
September, 2020
54
April, 2019
49
April, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
February, 2018
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
7
August, 2020
7
December, 2019
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
115
tsv
41
bam
41
bed narrowPeak
38
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
179
Homo sapiens
Biosample type
101
tissue
42
in vitro differentiated cells
33
cell line
4
primary cell
Organ
kidney
92
heart
34
liver
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
180
AMP
Genome assembly (visualization)
50
hg19
33
GRCh38
Lab
143
AMP-T2D consortium
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
embryo
kidney
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
180 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
17
9
2
1
1
EndoC_BH1
2
Synthesized DNA
1
primary cell
hepatocyte
4
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