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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
485
Transcription
41
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
617
February, 2021
379
November, 2017
341
May, 2020
338
May, 2021
309
August, 2021
249
October, 2019
215
August, 2017
207
June, 2019
114
February, 2023
96
May, 2022
90
July, 2019
83
December, 2017
80
April, 2019
76
November, 2018
68
May, 2019
47
September, 2023
46
March, 2020
40
May, 2024
40
September, 2020
37
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
20
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
480
bam
475
tsv
469
bigWig
89
txt
39
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
617
Homo sapiens
Biosample type
545
tissue
42
primary cell
26
in vitro differentiated cells
4
cell line
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
578
AMP
39
HPAP
Genome assembly (visualization)
484
hg19
478
GRCh38
Lab
578
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
1
inconsistent replicate
audit.WARNING.category!
inconsistent control read length
organ_slims!
pancreas
spinal cord
vasculature
BIOSAMPLE
ASSAY
617 results
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total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cell line
HepG2
1
1
iPSC derived cell line
2
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