Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
total RNA-seq
11
ATAC-seq
4
DNase-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
42
Transcription
17
DNA accessibility
Date released
180
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
52
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
37
fastq
4
bam
4
bed bed3+
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
Organism
59
Homo sapiens
Biosample type
37
primary cell
22
tissue
1
cell line
Organ
kidney
72
epithelium
71
heart
60
pancreas
43
musculature of body
42
vasculature
40
blood vessel
38
eye
37
artery
32
connective tissue
32
limb
31
brain
18
ureter
8
bone element
8
skeleton
2
adipose tissue
2
liver
Project
37
HPAP
18
T1D
5
AMP
Genome assembly (visualization)
4
GRCh38
2
hg19
Lab
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
5
AMP-T2D consortium
audit.WARNING.category!
inconsistent control read length
organ_slims!
kidney
BIOSAMPLE
ASSAY
60 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
11
2
body of pancreas
2
pancreas
2
cell line
EndoC_BH1
1
Download