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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
48
single cell RNA-seq
31
ChIP-seq
5
ATAC-seq
Assay category
173
Transcription
31
DNA binding
5
DNA accessibility
Target of assay
14
transcription factor
10
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
205
bam
195
bigWig
169
tsv
91
fastq
26
bed narrowPeak
26
bigBed narrowPeak
2
bed bed3+
Organism
209
Homo sapiens
Biosample type
133
tissue
53
primary cell
23
cell line
Organ
168
pancreas
38
epithelium
18
blood
18
bodily fluid
7
spleen
5
liver
2
connective tissue
Project
209
AMP
Genome assembly (visualization)
197
GRCh38
197
hg19
Lab
209
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
August, 2018
BIOSAMPLE
ASSAY
209 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
120
6
spleen
7
primary cell
pancreatic beta cell
9
2
pancreatic alpha cell
7
2
pancreatic acinar cell
5
1
pancreatic delta cell
4
pancreatic cell
3
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cell line
GM12878
18
HepG2
5
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