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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
65
Transcription
31
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
293
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bam
295
bigWig
217
bed narrowPeak
212
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
326
Homo sapiens
Biosample type
240
tissue
86
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
326
AMP
Genome assembly (visualization)
289
GRCh38
278
hg19
Lab
326
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
month_released!
December, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
326 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
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primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 28 more…
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