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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
3
single cell RNA-seq
Assay category
352
DNA binding
3
Transcription
Target of assay
234
transcription factor
77
histone
77
histone modification
71
control
65
recombinant protein
44
broad histone mark
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
352
November, 2017
335
May, 2021
314
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
86
May, 2019
74
November, 2018
69
December, 2017
65
October, 2018
60
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
30
February, 2018
28
December, 2018
25
February, 2020
25
May, 2024
22
January, 2019
20
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
350
bam
301
fastq
291
bigWig
269
bed narrowPeak
269
bigBed narrowPeak
49
bed broadPeak
47
bigBed broadPeak
46
tagAlign
3
tar
3
tsv
Organism
355
Homo sapiens
Biosample type
292
cell line
54
tissue
9
primary cell
Organ
292
liver
60
brain
5
epithelium
4
vasculature
2
blood vessel
1
pancreas
Project
355
AMP
Genome assembly (visualization)
254
hg19
242
GRCh38
Lab
355
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
spleen
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
355 results
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Clear Filters
ChIP-seq
single cell RNA-seq
cell line
HepG2
292
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
middle frontal area 46
9
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
pancreatic ductal cell
1
+ See 1 more…
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