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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
385
DNA binding
4
DNA accessibility
1
3D chromatin structure
Target of assay
234
transcription factor
77
histone
77
histone modification
71
control
65
recombinant protein
44
broad histone mark
33
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
372
bam
313
bigWig
304
fastq
294
bed narrowPeak
293
bigBed narrowPeak
67
tagAlign
58
bed broadPeak
51
bigBed broadPeak
3
tar
1
bedpe
1
hic
Organism
390
Homo sapiens
Biosample type
294
cell line
87
tissue
9
primary cell
Organ
294
liver
91
brain
6
epithelium
6
vasculature
5
pancreas
3
blood vessel
Project
390
AMP
Genome assembly (visualization)
265
GRCh38
263
hg19
Lab
385
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
October, 2017
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
294
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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