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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
12
ATAC-seq
1
Hi-C
Assay category
400
DNA binding
12
DNA accessibility
1
3D chromatin structure
Target of assay
234
transcription factor
89
histone
89
histone modification
74
control
65
recombinant protein
54
broad histone mark
35
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
387
bam
327
bigWig
321
fastq
306
bed narrowPeak
299
bigBed narrowPeak
81
tagAlign
62
bed broadPeak
51
bigBed broadPeak
3
tar
1
bedpe
1
hic
Organism
413
Homo sapiens
Biosample type
294
cell line
110
tissue
9
primary cell
Organ
294
liver
107
brain
10
pancreas
6
epithelium
6
vasculature
3
blood vessel
1
adipose tissue
1
connective tissue
1
spleen
Project
413
AMP
Genome assembly (visualization)
279
GRCh38
276
hg19
Lab
407
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
11
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
413 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
294
tissue
layer of hippocampus
22
brain
15
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 6 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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