Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
398
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
293
transcription factor
81
recombinant protein
77
control
77
histone
77
histone modification
RNA binding protein
44
broad histone mark
33
narrow histone mark
11
chromatin remodeller
5
other context
5
other post-translational modification
Date released
394
May, 2021
353
November, 2017
341
May, 2020
330
August, 2017
329
February, 2021
317
August, 2021
313
October, 2019
213
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
96
July, 2019
79
December, 2017
76
April, 2019
73
September, 2018
63
March, 2020
62
November, 2018
59
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
37
February, 2018
35
May, 2024
33
December, 2018
24
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
400
bam
337
bigWig
333
fastq
311
bed narrowPeak
310
bigBed narrowPeak
67
tagAlign
60
bed broadPeak
54
bigBed broadPeak
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
2
tar
1
csv
Organism
415
Homo sapiens
Biosample type
301
cell line
107
tissue
7
primary cell
Organ
295
liver
90
brain
13
blood
13
bodily fluid
9
spleen
7
pancreas
4
epithelium
4
vasculature
2
blood vessel
adipose tissue
1
connective tissue
Project
415
AMP
Genome assembly (visualization)
289
GRCh38
276
hg19
Lab
415
AMP-T2D consortium
Audit category:
8
missing controlled_by
Audit category:
inconsistent control read length
5
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
adipose tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
415 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
287
1
GM12878
13
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 7 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
See all biosamples
Download