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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
65
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
329
February, 2021
314
May, 2020
308
November, 2017
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
198
June, 2019
181
August, 2017
168
July, 2018
117
October, 2019
96
July, 2019
82
November, 2018
60
March, 2020
59
December, 2017
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
82
fastq
81
bam
74
bigWig
67
bed narrowPeak
67
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
82
Homo sapiens
Biosample type
56
cell line
25
tissue
1
primary cell
Organ
48
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
adipose tissue
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
73
GRCh38
65
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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