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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
44
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
10
November, 2018
9
January, 2019
8
January, 2021
1
January, 2018
Available data
45
bigWig
44
bam
44
bed narrowPeak
44
bigBed narrowPeak
44
fastq
Organism
53
Homo sapiens
Biosample type
45
cell line
8
primary cell
Organ
884
pancreas
644
liver
643
connective tissue
488
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
60
eye
53
blood
53
bodily fluid
32
nerve
27
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
8
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
45
AMP-T2D consortium
8
Kyle Gaulton, UCSD
audit.WARNING.category!
inconsistent control read length
target.investigated_as!
chromatin remodeller
control
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
44
1
primary cell
peripheral blood mononuclear cell
8
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