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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
64
DNase-seq
23
total RNA-seq
11
ATAC-seq
6
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
WGBS
Assay category
255
DNA binding
76
DNA accessibility
30
Transcription
6
3D chromatin structure
2
DNA methylation
Target of assay
216
histone
216
histone modification
126
narrow histone mark
90
broad histone mark
41
control
1
RNA binding protein
1
transcription factor
Date released
129
October, 2019
85
November, 2017
60
June, 2019
35
May, 2019
21
July, 2019
16
October, 2017
14
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
323
bam
283
bigWig
268
bed narrowPeak
185
bigBed narrowPeak
118
tagAlign
75
bed broadPeak
66
bed bed3+
66
bigBed broadPeak
32
tsv
15
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
371
Homo sapiens
Biosample type
360
tissue
11
primary cell
Organ
929
pancreas
764
liver
677
connective tissue
518
epithelium
490
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
371
AMP
Genome assembly (visualization)
286
GRCh38
229
hg19
Lab
371
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
audit.WARNING.category!
inconsistent control read length
organ_slims!
vasculature
BIOSAMPLE
ASSAY
371 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
+ See 89 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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