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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
14
Transcription
Target of assay
10
histone
10
histone modification
7
control
7
narrow histone mark
3
broad histone mark
2
transcription factor
Date released
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
33
bam
26
bigWig
24
fastq
14
tsv
11
bed narrowPeak
2
bed bed3+
Organism
34
Homo sapiens
Biosample type
26
in vitro differentiated cells
8
cell line
Organ
937
pancreas
764
liver
678
connective tissue
519
epithelium
491
adipose tissue
393
heart
354
kidney
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
34
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
34
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
organ_slims!
brain
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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