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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
21
total RNA-seq
4
pCHi-C
3
DNase-seq
Assay category
31
DNA accessibility
21
Transcription
Target of assay
2
histone
2
histone modification
narrow histone mark
Date released
25
February, 2023
19
October, 2019
8
February, 2021
3
June, 2019
1
February, 2020
Available data
26
bed narrowPeak
11
bam
4
bed bed3
4
txt
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
Organism
56
Homo sapiens
Biosample type
56
tissue
Organ
870
pancreas
710
liver
645
connective tissue
479
adipose tissue
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
27
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
30
hg19
11
GRCh38
Lab
56
AMP-T2D consortium
audit.WARNING.category!
inconsistent control read length
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
tissue
retina
15
3
3
islet of Langerhans
1
14
4
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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