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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
82
ChIP-seq
25
DNase-seq
14
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
108
Transcription
82
DNA binding
28
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
93
histone
93
histone modification
57
broad histone mark
narrow histone mark
14
control
11
transcription factor
9
RNA binding protein
Date released
92
August, 2021
42
April, 2019
25
June, 2019
25
May, 2024
19
July, 2019
12
May, 2019
7
March, 2020
6
October, 2019
2
February, 2020
2
May, 2021
1
February, 2023
Available data
115
bigWig
110
tsv
104
bam
96
bed narrowPeak
65
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
233
Homo sapiens
Biosample type
233
tissue
Organ
870
pancreas
710
liver
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
27
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
115
GRCh38
86
hg19
Lab
208
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
audit.WARNING.category!
inconsistent control read length
organ_slims!
blood vessel
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
233 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
26
3
3
4
2
1
1
1
left cardiac atrium
18
25
1
heart
1
10
18
4
1
1
1
heart right ventricle
17
9
1
1
2
1
1
right cardiac atrium
18
4
1
1
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