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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
8
ATAC-seq
6
total RNA-seq
4
DNase-seq
Assay category
29
DNA binding
12
DNA accessibility
6
Transcription
Target of assay
43
histone
43
histone modification
broad histone mark
16
control
13
narrow histone mark
Date released
39
October, 2019
6
February, 2021
2
February, 2020
Available data
44
bam
24
bed narrowPeak
22
bigWig
16
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
47
Homo sapiens
Biosample type
47
tissue
Organ
858
pancreas
728
liver
633
connective tissue
474
epithelium
470
adipose tissue
339
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
musculature of body
69
blood
69
bodily fluid
61
eye
31
embryo
27
nerve
21
spleen
19
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
47
AMP-T2D consortium
audit.WARNING.category!
inconsistent control read length
organ_slims!
musculature of body
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
tissue
tibial nerve
19
1
5
2
tibial artery
9
1
1
2
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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