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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
51
single cell RNA-seq
29
snATAC-seq
16
pCHi-C
1
Hi-C
Assay category
147
Transcription
84
DNA binding
29
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
54
May, 2022
45
May, 2020
18
September, 2020
8
January, 2021
1
March, 2023
Available data
180
bam
180
bigWig
fastq
96
tsv
84
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
277
Homo sapiens
Biosample type
277
primary cell
97
tissue
7
cell line
2
stem cell
Organ
epithelium
83
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
204
T1D
72
HPAP
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
204
Kyle Gaulton, UCSD
72
Klaus Kaestner, Upenn
1
ITG
Audit category:
5
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
award.project!
AMP
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
277 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
51
21
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
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