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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
412
transcription factor
388
histone
388
histone modification
198
broad histone mark
189
narrow histone mark
control
89
recombinant protein
83
RNA binding protein
26
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
35
November, 2017
20
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
77
bam
76
bed narrowPeak
76
bigWig
71
fastq
70
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
83
Homo sapiens
Biosample type
62
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
53
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
83
AMP
Genome assembly (visualization)
75
hg19
71
GRCh38
Lab
77
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
6
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
award.project!
HPAP
biosample_type!
tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
cell line
HepG2
51
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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