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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
187
single cell RNA-seq
149
total RNA-seq
100
ATAC-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
194
DNA binding
180
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
152
histone
152
histone modification
78
broad histone mark
74
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
55
May, 2021
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
408
fastq
387
bigWig
383
bam
210
bed narrowPeak
174
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
781
Homo sapiens
Biosample type
2553
tissue
781
primary cell
644
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
456
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
402
hg19
355
GRCh38
Lab
421
AMP-T2D consortium
324
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
award.project!
T1D
month_released!
May, 2020
BIOSAMPLE
ASSAY
781 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
12
52
35
31
1
Langerhans cell
85
48
pancreatic beta cell
13
12
21
23
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
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