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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
38
ATAC-seq
26
total RNA-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
1
snATAC-seq
Assay category
66
DNA binding
49
DNA accessibility
28
Transcription
7
DNA methylation
Target of assay
60
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
670
February, 2021
410
August, 2017
402
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
108
fastq
107
bam
107
bed narrowPeak
96
bigWig
69
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
150
Homo sapiens
Biosample type
92
tissue
57
cell line
1
primary cell
Organ
89
liver
31
pancreas
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
150
AMP
134
HPAP
Genome assembly (visualization)
106
hg19
75
GRCh38
Lab
86
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2020
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
liver
4
20
20
2
islet of Langerhans
18
6
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
41
1
GM12878
15
primary cell
pancreatic cell
1
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