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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
84
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
84
DNA binding
29
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
236
Homo sapiens
Biosample type
204
primary cell
27
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
108
AMP
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
236
Kyle Gaulton, UCSD
8
AMP-T2D consortium
0
Maike Sander, UCSD
Audit category:
5
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
236 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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