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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
707
ChIP-seq
229
ATAC-seq
178
DNase-seq
4
FAIRE-seq
Assay category
707
DNA binding
411
DNA accessibility
Target of assay
600
histone modification
599
histone
307
narrow histone mark
291
broad histone mark
107
transcription factor
32
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
163
June, 2019
153
October, 2019
109
August, 2017
93
May, 2019
89
August, 2021
72
December, 2017
65
April, 2019
65
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
27
May, 2020
25
November, 2019
17
November, 2018
16
February, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
5
May, 2021
3
December, 2018
2
March, 2020
Available data
2201
bam
2034
bigWig
1211
tsv
1118
bed narrowPeak
578
bigBed narrowPeak
522
fastq
278
tagAlign
233
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1112
Homo sapiens
Biosample type
984
tissue
cell line
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
127
liver
125
pancreas
100
blood vessel
100
vasculature
92
limb
62
artery
58
connective tissue
51
musculature of body
30
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1116
AMP
2
T1D
Genome assembly (visualization)
1013
GRCh38
910
hg19
Lab
972
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent control
17
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
biosample_type!
cell line
primary cell
BIOSAMPLE
ASSAY
1118 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
+ See 131 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 13 more…
stem cell
hESC
2
See all biosamples
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