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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
6
single cell RNA-seq
1
pCHi-C
Assay category
21
Transcription
Date released
6
August, 2021
5
February, 2020
5
July, 2019
4
October, 2019
2
March, 2020
Available data
207
bam
192
bed narrowPeak
169
bigWig
147
bigBed narrowPeak
51
bed broadPeak
51
bigBed broadPeak
47
bed bed3+
22
tsv
6
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
22
Homo sapiens
Biosample type
cell line
20
tissue
2
primary cell
Organ
478
connective tissue
401
adipose tissue
383
pancreas
159
liver
121
epithelium
116
heart
58
bone element
26
brain
18
kidney
16
blood vessel
16
vasculature
9
musculature of body
7
limb
6
artery
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
22
AMP-T2D consortium
audit.WARNING.category!
inconsistent control run_type
biosample_type!
cell line
BIOSAMPLE
ASSAY
22 results
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total RNA-seq
single cell RNA-seq
pCHi-C
tissue
aorta
1
4
1
tibial nerve
5
ascending aorta
2
pulmonary artery
2
thoracic aorta
2
+ See 3 more…
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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