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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
23
ATAC-seq
Assay category
339
DNA binding
23
DNA accessibility
Target of assay
279
transcription factor
81
recombinant protein
57
histone modification
56
histone
47
RNA binding protein
41
narrow histone mark
15
broad histone mark
10
chromatin remodeller
1
other context
1
other post-translational modification
Date released
193
November, 2017
44
November, 2018
36
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
1
February, 2021
Available data
658
bam
600
bigWig
442
fastq
419
bed narrowPeak
336
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
362
Homo sapiens
Biosample type
248
cell line
110
tissue
in vitro differentiated cells
4
primary cell
Organ
362
liver
193
pancreas
161
heart
156
brain
118
blood vessel
118
vasculature
113
epithelium
105
kidney
70
artery
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
21
connective tissue
14
musculature of body
13
spleen
11
vein
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
362
AMP
Genome assembly (visualization)
358
hg19
298
GRCh38
Lab
328
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
ATAC-seq
cell line
HepG2
247
1
tissue
liver
82
20
right lobe of liver
7
1
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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