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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
26
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
26
DNA binding
13
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
21
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
93
bam
80
bigWig
54
tsv
29
bed narrowPeak
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
97
Homo sapiens
Biosample type
tissue
66
cell line
31
primary cell
Organ
509
epithelium
441
pancreas
421
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
68
artery
55
kidney
42
blood
42
bodily fluid
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
97
AMP
Genome assembly (visualization)
89
hg19
82
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
audit.WARNING.category!
inconsistent control run_type
biosample_type!
tissue
month_released!
December, 2018
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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