Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
650
ChIP-seq
234
total RNA-seq
71
ATAC-seq
11
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
650
DNA binding
238
Transcription
74
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
402
transcription factor
134
histone
134
histone modification
112
control
89
recombinant protein
73
RNA binding protein
67
broad histone mark
66
narrow histone mark
25
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
311
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
57
November, 2018
43
December, 2017
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
826
bam
742
bigWig
521
fastq
512
bed narrowPeak
364
bigBed narrowPeak
235
tsv
60
bed broadPeak
60
bigBed broadPeak
60
tagAlign
28
bed bed3+
9
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
4
txt
3
tar
2
ibed
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
1005
Homo sapiens
Biosample type
2777
tissue
1087
primary cell
654
cell line
355
in vitro differentiated cells
10
stem cell
Organ
408
liver
103
epithelium
97
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
24
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
998
AMP
9
T1D
2
community
Genome assembly (visualization)
788
hg19
692
GRCh38
4
hg18
Lab
908
AMP-T2D consortium
52
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
207
inconsistent ontology term
2
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
41
inconsistent control read length
inconsistent control run_type
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2018
BIOSAMPLE
ASSAY
1009 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
MeRIP-seq
STARR-seq
Capture-C
GRO-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
370
14
1
2
2
2
1
1
EndoC_BH1
15
33
19
1
6
2
3
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
37
5
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 28 more…
See all biosamples
Download